白莲教徒接下满清大臣纳兰元述（甄子丹）所下的对付革命党人的命令后，在广州街头借“扶清灭洋”的口号大肆捣乱洋人的使馆、教堂等地盘，甚至连小学生也不放过，他们的举动令黄飞鸿（李连杰）、十三姨（关之琳）与梁宽（莫少聪）异常气愤。 在某个医学会议上，黄飞鸿与革命党领袖孙文（张铁林）一见如故，发现革命党人对救国更具远见时，他决定帮助革命党人逃过厄运。随后，他直捣白莲教总坛决胜九宫真人，揭开迷信假像，又因奋慨国运衰竭民智末开，不惜与纳兰元述决一死战。In the sequel to the Tsui Hark classic, Wong Fei-Hung faces The White Lotus society, a fanatical cult seeking to drive the Europeans out of China through violence, even attacking Chinese who follow Western ways. Wong must also defend Dr. Sun Yat Sen, a revolutionary, from the military. With his friends, loved ones, and the future of China itself at stake, Wong must once again use his martial arts skills to defend the innocent.
